Synthesis and In Silico Docking of New Pyrazolo[ 4,3-e]pyrido[ 1,2-a]pyrimidine-based Cytotoxic Agents

Int J Mol Sci. 2021 Sep 23;22(19):10258. doi: 10.3390/ijms221910258.

Abstract

To explore a new set of anticancer agents, a novel series of pyrazolo[4,3-e]pyrido[1,2-a]pyrimidine derivativeshave been designed and synthesized viacyclocondensation reactions of pyrazolo-enaminone with a series of arylidenemalononitriles; compound 5 was obtained from 5-amino-4-cyanopyrazole. The structures of the target compounds were investigated by spectral techniques and elemental analysis (IR, UV-Vis, 1H NMR, 13C NMR and ESI-MS). All compounds were evaluated for their in vitro cytotoxicity employing a panel of different human tumor cell lines, A375, HT29, MCF7, A2780, FaDu as well as non-malignant NIH 3T3 and HEK293 cells. It has been found that the pyrazolo-pyrido-pyrimidine analog bearing a 4-Br-phenyl moiety was the most active toward many cell lines with EC50 values ranging between 9.1 and 13.5 µM. Moreover, in silico docking studies of the latter with six anticancer drug targets, i.e., DHFR, VEGFR2, HER-2/neu, hCA-IX, CDK6 and LOX5, were also performed, in order to gain some insights into their putative mode of binding interaction and to estimate the free binding energy of this bioactive molecule.

Keywords: SAR; cytotoxicity; in silico docking; pyrazolo-pyrido-pyrimidines; tumor cell lines.

MeSH terms

  • Animals
  • Antineoplastic Agents / pharmacology*
  • Cell Line
  • Cell Line, Tumor
  • Computer Simulation
  • Cytotoxins / pharmacology*
  • Drug Screening Assays, Antitumor / methods
  • HEK293 Cells
  • HT29 Cells
  • Humans
  • MCF-7 Cells
  • Mice
  • Molecular Docking Simulation / methods
  • NIH 3T3 Cells
  • Pyrazoles / pharmacology
  • Pyrimidines / pharmacology*

Substances

  • Antineoplastic Agents
  • Cytotoxins
  • Pyrazoles
  • Pyrimidines
  • pyrimidine
  • 5-amino-4-cyanopyrazole