Dissected aorta segmentation using convolutional neural networks

Comput Methods Programs Biomed. 2021 Nov:211:106417. doi: 10.1016/j.cmpb.2021.106417. Epub 2021 Sep 15.

Abstract

Background and objective: Aortic dissection is a severe cardiovascular pathology in which an injury of the intimal layer of the aorta allows blood flowing into the aortic wall, forcing the wall layers apart. Such situation presents a high mortality rate and requires an in-depth understanding of the 3-D morphology of the dissected aorta to plan the right treatment. An accurate automatic segmentation algorithm is therefore needed.

Method: In this paper, we propose a deep-learning-based algorithm to segment dissected aorta on computed tomography angiography (CTA) images. The algorithm consists of two steps. Firstly, a 3-D convolutional neural network (CNN) is applied to divide the 3-D volume into two anatomical portions. Secondly, two 2-D CNNs based on pyramid scene parsing network (PSPnet) segment each specific portion separately. An edge extraction branch was added to the 2-D model to get higher segmentation accuracy on intimal flap area.

Results: The experiments conducted and the comparisons made show that the proposed solution performs well with an average dice index over 92%. The combination of 3-D and 2-D models improves the aorta segmentation accuracy compared to 3-D only models and the segmentation robustness compared to 2-D only models. The edge extraction branch improves the DICE index near aorta boundaries from 73.41% to 81.39%.

Conclusions: The proposed algorithm has satisfying performance for capturing the aorta structure while avoiding false positives on the intimal flaps.

Keywords: Aorta dissection; Computed tomography; Deep learning; Image segmentation.

MeSH terms

  • Algorithms
  • Aorta* / diagnostic imaging
  • Computed Tomography Angiography
  • Image Processing, Computer-Assisted
  • Neural Networks, Computer*
  • Tomography, X-Ray Computed