Conformational flexibility of EptA driven by an interdomain helix provides insights for enzyme-substrate recognition

IUCrJ. 2021 Jul 15;8(Pt 5):732-746. doi: 10.1107/S2052252521005613. eCollection 2021 Sep 1.

Abstract

Many pathogenic gram-negative bacteria have developed mechanisms to increase resistance to cationic antimicrobial peptides by modifying the lipid A moiety. One modification is the addition of phospho-ethano-lamine to lipid A by the enzyme phospho-ethano-lamine transferase (EptA). Previously we reported the structure of EptA from Neisseria, revealing a two-domain architecture consisting of a periplasmic facing soluble domain and a transmembrane domain, linked together by a bridging helix. Here, the conformational flexibility of EptA in different detergent environments is probed by solution scattering and intrinsic fluorescence-quenching studies. The solution scattering studies reveal the enzyme in a more compact state with the two domains positioned close together in an n-do-decyl-β-d-maltoside micelle environment and an open extended structure in an n-do-decyl-phospho-choline micelle environment. Intrinsic fluorescence quenching studies localize the domain movements to the bridging helix. These results provide important insights into substrate binding and the molecular mechanism of endotoxin modification by EptA.

Keywords: EptA; conformational flexibility; enzyme substrate recognition; phosphoethanolamine transferase; small-angle X-ray scattering; tryptophan fluorescence.

Grants and funding

This work was funded by National Health and Medical Research Council of Australia grants APP1003697 and APP1078642 to Alice Vrielink, Charlene Kahler, Alice Vrielink, and Charlene Kahler; ARC Centre for Nanoscale BioPhotonics grant LE120100092 to Alice Vrielink.