RNA-Dependent RNA Polymerase from Heterobasidion RNA Virus 6 Is an Active Replicase In Vitro

Viruses. 2021 Aug 31;13(9):1738. doi: 10.3390/v13091738.

Abstract

Heterobasidion RNA virus 6 (HetRV6) is a double-stranded (ds)RNA mycovirus and a member of the recently established genus Orthocurvulavirus within the family Orthocurvulaviridae. The purpose of the study was to determine the biochemical requirements for RNA synthesis catalyzed by HetRV6 RNA-dependent RNA polymerase (RdRp). HetRV6 RdRp was expressed in Escherichia coli and isolated to near homogeneity using liquid chromatography. The enzyme activities were studied in vitro using radiolabeled UTP. The HetRV6 RdRp was able to initiate RNA synthesis in a primer-independent manner using both virus-related and heterologous single-stranded (ss)RNA templates, with a polymerization rate of about 46 nt/min under optimal NTP concentration and temperature. NTPs with 2'-fluoro modifications were also accepted as substrates in the HetRV6 RdRp-catalyzed RNA polymerization reaction. HetRV6 RdRp transcribed viral RNA genome via semi-conservative mechanism. Furthermore, the enzyme demonstrated terminal nucleotidyl transferase (TNTase) activity. Presence of Mn2+ was required for the HetRV6 RdRp catalyzed enzymatic activities. In summary, our study shows that HetRV6 RdRp is an active replicase in vitro that can be potentially used in biotechnological applications, molecular biology, and biomedicine.

Keywords: TNTase activity; dsRNA virus; mycovirus; replicase activity; semi-conservative transcription; viral RdRp.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Fungal Viruses / genetics
  • Fungal Viruses / metabolism
  • Genome, Viral
  • Nucleotidyltransferases
  • RNA Viruses / enzymology*
  • RNA Viruses / genetics
  • RNA, Double-Stranded
  • RNA, Viral
  • RNA-Dependent RNA Polymerase / genetics
  • RNA-Dependent RNA Polymerase / metabolism*
  • Viral Proteins / genetics
  • Viral Proteins / metabolism
  • Viral Replicase Complex Proteins / metabolism*
  • Virus Replication

Substances

  • RNA, Double-Stranded
  • RNA, Viral
  • Viral Proteins
  • Viral Replicase Complex Proteins
  • Nucleotidyltransferases
  • RNA-Dependent RNA Polymerase