In silico and in vitro evaluation of efflux pumps inhibition of α,β-amyrin

J Biomol Struct Dyn. 2022;40(23):12785-12799. doi: 10.1080/07391102.2021.1976277. Epub 2021 Sep 16.

Abstract

The use of the bacterial efflux pump mechanism to reduce the concentrations of antibiotics in the intracellular to the extracellular region is one of the main mechanisms by which bacteria acquire resistance to antibiotics. The present study aims to evaluate the antibacterial activity of the α,β-amyrin mixture isolated from Protium heptaphyllum against the multidrug-resistant strains of Escherichia coli 06 and Staphylococcus aureus 10, and to verify the inhibition of the efflux resistance mechanisms against the strains of S. aureus 1199B and K2068, carrying the NorA and MepA efflux pumps, respectively. The α,β-amyrin did not show clinically relevant direct bacterial activity. However, the α,β-amyrin when associated with the gentamicin antibiotic presented synergistic effect against the multidrug-resistant bacterial strain of S. aureus 10. In strains with efflux pumps, α,β-amyrin was able to inhibit the action of the efflux protein NorA against Ethidium Bromide. However, this inhibitory effect was not observed in the MepA efflux pump. In addition, when evaluating the effect of standard efflux pump inhibitors, clorptomazine and CCCP, α,β-amyrin showed a decrease in MIC, demonstrating the presence of the efflux mechanism through synergism. Docking studies indicate that α, β-amyrin have a higher affinity energy to MepA, and NorA than ciprofloxacin and norfloxacin. Also, α, β-amyrin bind to the same region of the binding site as these antibiotics. It was concluded that the α, β-amyrin has the potential to increase antibacterial activity with the association of antibiotics, together with the ability to be a strong candidate for an efflux pump inhibitor.Communicated by Ramaswamy H. Sarma.

Keywords: antibacterial activity; efflux pump; molecular docking; α; β-amyrin mixture.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Bacterial Proteins / chemistry
  • Microbial Sensitivity Tests
  • Multidrug Resistance-Associated Proteins*
  • Norfloxacin / chemistry
  • Norfloxacin / metabolism
  • Norfloxacin / pharmacology
  • Staphylococcus aureus*

Substances

  • beta-amyrin
  • Multidrug Resistance-Associated Proteins
  • Anti-Bacterial Agents
  • Norfloxacin
  • Bacterial Proteins