A Novel Intercellular Communication-Associated Gene Signature for Prognostic Prediction and Clinical Value in Patients With Lung Adenocarcinoma

Qin-Yu Zhao; Le-Ping Liu; Lu Lu; Rong Gui; Yan-Wei Luo

doi:10.3389/fgene.2021.702424

A Novel Intercellular Communication-Associated Gene Signature for Prognostic Prediction and Clinical Value in Patients With Lung Adenocarcinoma

Front Genet. 2021 Aug 23:12:702424. doi: 10.3389/fgene.2021.702424. eCollection 2021.

Authors

Qin-Yu Zhao^{1

2}, Le-Ping Liu¹, Lu Lu¹, Rong Gui¹, Yan-Wei Luo¹

Affiliations

¹ Department of Blood Transfusion, The Third Xiangya Hospital of Central South University, Changsha, China.
² College of Engineering and Computer Science, Australian National University, Canberra, ACT, Australia.

Abstract

Background: Lung cancer remains the leading cause of cancer death globally, with lung adenocarcinoma (LUAD) being its most prevalent subtype. This study aimed to identify the key intercellular communication-associated genes (ICAGs) in LUAD.

Methods: Eight publicly available datasets were downloaded from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. The prognosis-related ICAGs were identified and a risk score was developed by using survival analysis. Machine learning models were trained to predict LUAD recurrence based on the selected ICAGs and clinical information. Comprehensive analyses on ICAGs and tumor microenvironment were performed. A single-cell RNA-sequencing dataset was assessed to further elucidate aberrant changes in intercellular communication.

Results: Eight ICAGs with prognostic potential were identified in the present study, and a risk score was derived accordingly. The best machine-learning model to predict relapse was developed based on clinical information and the expression levels of these eight ICAGs. This model achieved a remarkable area under receiver operator characteristic curves of 0.841. Patients were divided into high- and low-risk groups according to their risk scores. DNA replication and cell cycle were significantly enriched by the differentially expressed genes between the high- and the low-risk groups. Infiltrating immune cells, immune functions were significantly related to ICAGs expressions and risk scores. Additionally, the changes of intercellular communication were modeled by analyzing the single-cell sequencing dataset.

Conclusion: The present study identified eight key ICAGs in LUAD, which could contribute to patient stratification and act as novel therapeutic targets.

Keywords: intercellular communication; lung adenocarcinoma; machine learning; prognosis prediction; single-cell RNA-sequencing; tumor microenvironment.