Identification of intracellular glycosaminoglycan-interacting proteins by affinity purification mass spectrometry

Biol Chem. 2021 Sep 1;402(11):1427-1440. doi: 10.1515/hsz-2021-0167. Print 2021 Oct 26.

Abstract

Glycosaminoglycans (GAGs) are essential functional components of the extracellular matrix (ECM). Artificial GAGs like sulfated hyaluronan (sHA) exhibit pro-osteogenic properties and boost healing processes. Hence, they are of high interest for supporting bone regeneration and wound healing. Although sulfated GAGs (sGAGs) appear intracellularly, the knowledge about intracellular effects and putative interaction partners is scarce. Here we used an affinity-purification mass spectrometry-based (AP-MS) approach to identify novel and particularly intracellular sGAG-interacting proteins in human bone marrow stromal cells (hBMSC). Overall, 477 proteins were found interacting with at least one of four distinct sGAGs. Enrichment analysis for protein localization showed that mainly intracellular and cell-associated interacting proteins were identified. The interaction of sGAG with α2-macroglobulin receptor-associated protein (LRPAP1), exportin-1 (XPO1), and serine protease HTRA1 (HTRA1) was confirmed in reverse assays. Consecutive pathway and cluster analysis led to the identification of biological processes, namely processes involving binding and processing of nucleic acids, LRP1-dependent endocytosis, and exosome formation. Respecting the preferentially intracellular localization of sGAG in vesicle-like structures, also the interaction data indicate sGAG-specific modulation of vesicle-based transport processes. By identifying many sGAG-specific interacting proteins, our data provide a resource for upcoming studies aimed at molecular mechanisms and understanding of sGAG cellular effects.

Keywords: GAG-biotin; LC-MS/MS; SaOS2/osteoblast cell line; hBMSC; pull-down approach; sulfated glycosaminoglycan derivatives.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cells, Cultured
  • Chromatography, Liquid
  • Exportin 1 Protein
  • Glycosaminoglycans / chemistry
  • Glycosaminoglycans / metabolism*
  • High-Temperature Requirement A Serine Peptidase 1 / chemistry
  • High-Temperature Requirement A Serine Peptidase 1 / isolation & purification
  • High-Temperature Requirement A Serine Peptidase 1 / metabolism*
  • Humans
  • Karyopherins / chemistry
  • Karyopherins / isolation & purification
  • Karyopherins / metabolism*
  • LDL-Receptor Related Protein-Associated Protein / chemistry
  • LDL-Receptor Related Protein-Associated Protein / isolation & purification
  • LDL-Receptor Related Protein-Associated Protein / metabolism*
  • Mesenchymal Stem Cells / chemistry
  • Mesenchymal Stem Cells / metabolism
  • Receptors, Cytoplasmic and Nuclear / chemistry
  • Receptors, Cytoplasmic and Nuclear / isolation & purification
  • Receptors, Cytoplasmic and Nuclear / metabolism*
  • Tandem Mass Spectrometry

Substances

  • Glycosaminoglycans
  • Karyopherins
  • LDL-Receptor Related Protein-Associated Protein
  • Receptors, Cytoplasmic and Nuclear
  • High-Temperature Requirement A Serine Peptidase 1
  • HTRA1 protein, human