RNA-binding protein Hfq downregulates locus of enterocyte effacement-encoded regulators independent of small regulatory RNA in enterohemorrhagic Escherichia coli

Mol Microbiol. 2022 Jan;117(1):86-101. doi: 10.1111/mmi.14799. Epub 2021 Aug 31.

Abstract

Enterohemorrhagic Escherichia coli (EHEC) causes severe human diseases worldwide. The type 3 secretion system and effector proteins are essential for EHEC infection, and are encoded by the locus of enterocyte effacement (LEE). RNA-binding protein Hfq is essential for small regulatory RNA (sRNA)-mediated regulation at a posttranscriptional level and full virulence of many pathogenic bacteria. Although two early studies indicated that Hfq represses LEE expression by posttranscriptionally controlling the expression of genes grlRA and/or ler, both of which encode LEE regulators mediating a positive regulatory loop, the detailed molecular mechanism and biological significance remain unclear. Herein, we show that LEE overexpression was caused by defective RNA-binding activity of the Hfq distal face, which posttranscriptionally represses grlA and ler expression. In vitro analyses revealed that the Hfq distal face directly binds near the translational initiation site of grlA and ler mRNAs, and inhibits their translation. Taken together, we conclude that Hfq inhibits grlA and ler translation by binding their mRNAs through the distal face in an sRNA-independent manner. Additionally, we show that Hfq-mediated repression of LEE is critical for normal EHEC growth because all suppressor mutations that restored the growth defect in the hfq mutant abolished hfq deletion-induced overexpression of LEE.

Keywords: EHEC; Hfq; locus of enterocyte effacement; pathogenicity; posttranscriptional regulation; type three secretion system.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Enterohemorrhagic Escherichia coli / genetics*
  • Enterohemorrhagic Escherichia coli / growth & development
  • Enterohemorrhagic Escherichia coli / pathogenicity
  • Escherichia coli Infections / microbiology*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Gene Expression Regulation, Bacterial / genetics*
  • Host Factor 1 Protein / genetics
  • Host Factor 1 Protein / metabolism*
  • Humans
  • Mutation
  • Phosphoproteins / genetics
  • Phosphoproteins / metabolism
  • Protein Biosynthesis
  • RNA, Bacterial / genetics
  • RNA, Messenger / genetics
  • RNA, Small Untranslated / genetics*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Trans-Activators / genetics
  • Trans-Activators / metabolism*
  • Type III Secretion Systems
  • Virulence

Substances

  • Escherichia coli Proteins
  • GrlA protein, E coli
  • Hfq protein, E coli
  • Host Factor 1 Protein
  • LEE protein, E coli
  • Ler protein, E coli
  • Phosphoproteins
  • RNA, Bacterial
  • RNA, Messenger
  • RNA, Small Untranslated
  • RNA-Binding Proteins
  • Trans-Activators
  • Type III Secretion Systems