Crystal Structure Reveals the Full Ras-Raf Interface and Advances Mechanistic Understanding of Raf Activation

Biomolecules. 2021 Jul 7;11(7):996. doi: 10.3390/biom11070996.

Abstract

Ras and Raf-kinase interact through the Ras-binding (RBD) and cysteine-rich domains (CRD) of Raf to signal through the mitogen-activated protein kinase pathway, yet the molecular mechanism leading to Raf activation has remained elusive. We present the 2.8 Å crystal structure of the HRas-CRaf-RBD_CRD complex showing the Ras-Raf interface as a continuous surface on Ras, as seen in the KRas-CRaf-RBD_CRD structure. In molecular dynamics simulations of a Ras dimer model formed through the α4-α5 interface, the CRD is dynamic and located between the two Ras protomers, poised for direct or allosteric modulation of functionally relevant regions of Ras and Raf. We propose a molecular model in which Ras binding is involved in the release of Raf autoinhibition while the Ras-Raf complex dimerizes to promote a platform for signal amplification, with Raf-CRD centrally located to impact regulation and function.

Keywords: HRas–CRaf-RBD_CRD crystal structure; MAPK; Raf; Raf cystein-rich domain (CRD); Ras; Ras dimerization; Ras–Raf-RBD_CRD dimer simulations; allosteric connections.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Crystallography, X-Ray
  • Humans
  • Molecular Dynamics Simulation*
  • Protein Domains
  • Protein Structure, Quaternary
  • Proto-Oncogene Proteins c-raf / chemistry*
  • Proto-Oncogene Proteins p21(ras) / chemistry*

Substances

  • Proto-Oncogene Proteins c-raf
  • Raf1 protein, human
  • HRAS protein, human
  • Proto-Oncogene Proteins p21(ras)