Clustering and control for adaptation uncovers time-warped spike time patterns in cortical networks in vivo

Sci Rep. 2021 Jul 29;11(1):15066. doi: 10.1038/s41598-021-94002-0.

Abstract

How information in the nervous system is encoded by patterns of action potentials (i.e. spikes) remains an open question. Multi-neuron patterns of single spikes are a prime candidate for spike time encoding but their temporal variability requires further characterisation. Here we show how known sources of spike count variability affect stimulus-evoked spike time patterns between neurons separated over multiple layers and columns of adult rat somatosensory cortex in vivo. On subsets of trials (clusters) and after controlling for stimulus-response adaptation, spike time differences between pairs of neurons are "time-warped" (compressed/stretched) by trial-to-trial changes in shared excitability, explaining why fixed spike time patterns and noise correlations are seldom reported. We show that predicted cortical state is correlated between groups of 4 neurons, introducing the possibility of spike time pattern modulation by population-wide trial-to-trial changes in excitability (i.e. cortical state). Under the assumption of state-dependent coding, we propose an improved potential encoding capacity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Action Potentials / physiology
  • Animals
  • Humans
  • Models, Neurological
  • Nervous System Physiological Phenomena*
  • Nervous System*
  • Neurons / physiology*
  • Rats
  • Somatosensory Cortex / physiology
  • Visual Cortex / physiology*