Identification of prognostic long non-coding RNA signature with potential drugs in hepatocellular carcinoma

Aging (Albany NY). 2021 Jul 20;13(14):18789-18805. doi: 10.18632/aging.203322. Epub 2021 Jul 20.

Abstract

Hepatocellular carcinoma (HCC) is the primary malignancy in the liver with high rate of death and recurrence. Novel prognostic model would be crucial for early diagnosis and improved clinical decision. The study aims to provide an effective lncRNA-based signature to predict survival time and tumor recurrence for HCC. Based on public database, lncRNA-based classifiers for overall survival and tumor recurrence were built with regression analysis and cross validation strategy. According to the risk-score of the classifiers, the whole cohorts were divided into groups with high and low risk. Afterwards, the efficiency of the lncRNA-based classifiers was evaluated and compared with other clinical factors. Finally, candidate small molecules for high risk groups were further screened using drug response databases to explore potential drugs for HCC treatment.

Keywords: drug response; hepatocellular carcinoma; long non-coding RNA; prognosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers, Tumor / analysis*
  • Carcinoma, Hepatocellular / genetics
  • Carcinoma, Hepatocellular / mortality*
  • Carcinoma, Hepatocellular / pathology
  • Cell Line, Tumor
  • Female
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Liver / pathology
  • Liver Neoplasms / genetics
  • Liver Neoplasms / mortality*
  • Liver Neoplasms / pathology
  • Male
  • Predictive Value of Tests
  • RNA, Long Noncoding / analysis*
  • RNA, Long Noncoding / genetics
  • RNA, Long Noncoding / metabolism
  • ROC Curve
  • Risk Factors
  • Survival Analysis

Substances

  • Biomarkers, Tumor
  • RNA, Long Noncoding