Ammonia synthesis by electrochemical nitrogen reduction reaction (NRR) is a promising alternative to the Haber-Bosch process. Accurate measurement of produced ammonia requires rigorous criteria, which rely on a deeper understanding of ammonia characteristics. Herein, we systematically investigated the interaction of ammonia with Nafion membrane and electrolyte to reveal factors that may induce deviation in ammonia measurements. We demonstrated desirable characteristics of Nafion membrane as a separator in view of the low adsorption rate and low diffusion rate for ammonia. But one should be aware of the possible contaminants pre-existing in the membrane. It was also observed that the acid electrolyte had a much greater affinity for ammonia compared with base electrolyte. Specifically, the acid electrolyte is more vulnerable to potential ammonia contaminant in the feeding gas, whereas base electrolyte is inclined to lose produced ammonia under a continuous nitrogen flow. The findings provide a deeper understanding of ammonia's behavior in NRR test and help obtain accurate and credible ammonia measurements.