Systematic mining of fungal chimeric terpene synthases using an efficient precursor-providing yeast chassis

Proc Natl Acad Sci U S A. 2021 Jul 20;118(29):e2023247118. doi: 10.1073/pnas.2023247118.

Abstract

Chimeric terpene synthases, which consist of C-terminal prenyltransferase (PT) and N-terminal class I terpene synthase (TS) domains (termed PTTSs here), is unique to fungi and produces structurally diverse di- and sesterterpenes. Prior to this study, 20 PTTSs had been functionally characterized. Our understanding of the origin and functional evolution of PTTS genes is limited. Our systematic search of sequenced fungal genomes among diverse taxa revealed that PTTS genes were restricted to Dikarya. Phylogenetic findings indicated different potential models of the origin and evolution of PTTS genes. One was that PTTS genes originated in the common Dikarya ancestor and then underwent frequent gene loss among various subsequent lineages. To understand their functional evolution, we selected 74 PTTS genes for biochemical characterization in an efficient precursor-providing yeast system employing chassis-based, robot-assisted, high-throughput automatic assembly. We found 34 PTTS genes that encoded active enzymes and collectively produced 24 di- and sesterterpenes. About half of these di- and sesterterpenes were also the products of the 20 known PTTSs, indicating functional conservation, whereas the PTTS products included the previously unknown sesterterpenes, sesterevisene (1), and sesterorbiculene (2), suggesting that a diversity of PTTS products awaits discovery. Separating functional PTTSs into two monophyletic groups implied that an early gene duplication event occurred during the evolution of the PTTS family followed by functional divergence with the characteristics of distinct cyclization mechanisms.

Keywords: chimeric terpene synthases; diterpene; evolution; fungi; sesterterpene.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alkyl and Aryl Transferases / genetics*
  • Alkyl and Aryl Transferases / metabolism
  • Diterpenes / chemistry
  • Diterpenes / metabolism
  • Evolution, Molecular
  • Fungal Proteins / genetics*
  • Fungal Proteins / metabolism
  • Fungi / classification
  • Fungi / enzymology
  • Fungi / genetics
  • Genome, Fungal / genetics
  • Molecular Structure
  • Mutant Chimeric Proteins / genetics*
  • Mutant Chimeric Proteins / metabolism
  • Mutation
  • Phylogeny
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Sesterterpenes / chemistry
  • Sesterterpenes / metabolism

Substances

  • Diterpenes
  • Fungal Proteins
  • Mutant Chimeric Proteins
  • Sesterterpenes
  • Alkyl and Aryl Transferases
  • terpene synthase