Identification of small molecules that interfere with c-di-GMP signaling and induce dispersal of Pseudomonas aeruginosa biofilms

NPJ Biofilms Microbiomes. 2021 Jul 9;7(1):59. doi: 10.1038/s41522-021-00225-4.

Abstract

Microbial biofilms are involved in a number of infections that cannot be cured, as microbes in biofilms resist host immune defenses and antibiotic therapies. With no strict biofilm-antibiotic in the current pipelines, there is an unmet need for drug candidates that enable the current antibiotics to eradicate bacteria in biofilms. We used high-throughput screening to identify chemical compounds that reduce the intracellular c-di-GMP content in Pseudomonas aeruginosa. This led to the identification of a small molecule that efficiently depletes P. aeruginosa for c-di-GMP, inhibits biofilm formation, and disperses established biofilm. A combination of our lead compound with standard of care antibiotics showed improved eradication of an implant-associated infection established in mice. Genetic analyses provided evidence that the anti-biofilm compound stimulates the activity of the c-di-GMP phosphodiesterase BifA in P. aeruginosa. Our work constitutes a proof of concept for c-di-GMP phosphodiesterase-activating drugs administered in combination with antibiotics as a viable treatment strategy for otherwise recalcitrant infections.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology*
  • Biofilms / drug effects*
  • Chromatography, High Pressure Liquid
  • Cyclic GMP / analogs & derivatives*
  • Cyclic GMP / metabolism
  • Dose-Response Relationship, Drug
  • Drug Discovery
  • Gene Expression Profiling
  • Gene Expression Regulation, Bacterial / drug effects
  • High-Throughput Nucleotide Sequencing
  • Mice
  • Pseudomonas aeruginosa / drug effects*
  • Pseudomonas aeruginosa / physiology*
  • Signal Transduction / drug effects*
  • Tandem Mass Spectrometry
  • Transcriptome

Substances

  • Anti-Bacterial Agents
  • bis(3',5')-cyclic diguanylic acid
  • Cyclic GMP