Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth

Genomics. 2021 Sep;113(5):2953-2964. doi: 10.1016/j.ygeno.2021.06.037. Epub 2021 Jun 30.

Abstract

In vertebrates, the somatotropic axis comprising the pituitary gland, liver and muscle plays a major role in myogenesis. Its output in terms of muscle growth is highly affected by nutritional and environmental cues, and thus likely epigenetically regulated. Hydroxymethylation is emerging as a DNA modification that modulates gene expression but a holistic characterization of the hydroxymethylome of the somatotropic axis has not been investigated to date. Using reduced representation 5-hydroxymethylcytosine profiling we demonstrate tissue-specific localization of 5-hydroxymethylcytosines at single nucleotide resolution. Their abundance within gene bodies and promoters of several growth-related genes supports their pertinent role in gene regulation. We propose that cytosine hydroxymethylation may contribute to the phenotypic plasticity of growth through epigenetic regulation of the somatotropic axis.

Keywords: DNA hydroxymethylation; Epigenetics; Growth; Somatotropic axis; Teleosts.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5-Methylcytosine*
  • Animals
  • Cichlids* / genetics
  • Cichlids* / metabolism
  • Cytosine / metabolism
  • DNA / metabolism
  • DNA Methylation
  • Epigenesis, Genetic

Substances

  • 5-Methylcytosine
  • Cytosine
  • DNA