Multilocus Variable-Number Tandem-Repeat Analysis of Enterohemorrhagic Escherichia coli Serogroups O157, O26, and O111 Based on a De Novo Look-Up Table Constructed by Regression Analysis

Foodborne Pathog Dis. 2021 Sep;18(9):647-654. doi: 10.1089/fpd.2020.2921. Epub 2021 Jun 30.

Abstract

Multilocus variable-number tandem-repeat analysis (MLVA) is a widely accepted molecular typing tool for enterohemorrhagic Escherichia coli (EHEC). However, ensuring the accuracy of MLVA data among multiple laboratories remains difficult. We developed a method of constructing adjusted look-up tables, which are necessary for MLVA profiling, at each laboratory using a regression analysis based on electrophoresis data from 24 in-house reference strains. On performing MLVA against 51 EHEC O157 isolates, the repeat numbers of 46 isolates were determined accurately using the look-up table with a 99% prediction interval, an outcome superior to that when using a 95% prediction interval. For the remaining five isolates, although the electrophoresis size fell outside the look-up table, we were able to predict the repeat number accurately by extrapolation or the nearest values of the look-up table. Our approach provides more accurate results than a nonadjusted conventional look-up table for calibrating MLVA profiles.

Keywords: interlaboratory comparison; multilocus variable-number tandem-repeat analysis; regression analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Enterohemorrhagic Escherichia coli* / genetics
  • Escherichia coli Infections*
  • Escherichia coli O157* / genetics
  • Humans
  • Minisatellite Repeats
  • Regression Analysis
  • Serogroup