The amniotic fluid cell-free transcriptome in spontaneous preterm labor

Sci Rep. 2021 Jun 29;11(1):13481. doi: 10.1038/s41598-021-92439-x.

Abstract

The amniotic fluid (AF) cell-free RNA was shown to reflect physiological and pathological processes in pregnancy, but its value in the prediction of spontaneous preterm delivery is unknown. Herein we profiled cell-free RNA in AF samples collected from women who underwent transabdominal amniocentesis after an episode of spontaneous preterm labor and subsequently delivered within 24 h (n = 10) or later (n = 28) in gestation. Expression of known placental single-cell RNA-Seq signatures was quantified in AF cell-free RNA and compared between the groups. Random forest models were applied to predict time-to-delivery after amniocentesis. There were 2385 genes differentially expressed in AF samples of women who delivered within 24 h of amniocentesis compared to gestational age-matched samples from women who delivered after 24 h of amniocentesis. Genes with cell-free RNA changes were associated with immune and inflammatory processes related to the onset of labor, and the expression of placental single-cell RNA-Seq signatures of immune cells was increased with imminent delivery. AF transcriptomic prediction models captured these effects and predicted delivery within 24 h of amniocentesis (AUROC = 0.81). These results may inform the development of biomarkers for spontaneous preterm birth.

Publication types

  • Clinical Trial
  • Research Support, N.I.H., Intramural

MeSH terms

  • Adult
  • Amniocentesis
  • Amniotic Fluid / metabolism*
  • Cell-Free Nucleic Acids / biosynthesis*
  • Cell-Free Nucleic Acids / genetics
  • Cross-Sectional Studies
  • Female
  • Gene Expression Regulation*
  • Humans
  • Obstetric Labor, Premature / genetics
  • Obstetric Labor, Premature / metabolism*
  • Pregnancy
  • RNA-Seq*
  • Retrospective Studies

Substances

  • Cell-Free Nucleic Acids