High-Efficiency Protection of Linear DNA in Cell-Free Extracts from Escherichia coli and Vibrio natriegens

ACS Synth Biol. 2021 Jul 16;10(7):1615-1624. doi: 10.1021/acssynbio.1c00110. Epub 2021 Jun 23.

Abstract

The field of cell-free synthetic biology is an emerging branch of engineered biology that allows for rapid prototyping of biological designs and, in its own right, is becoming a venue for the in vitro operation of gene circuit-based sensors and biomanufacturing. To date, the related DNA encoded tools that operate in cell-free reactions have primarily relied on plasmid DNA inputs, as linear templates are highly susceptible to degradation by exonucleases present in cell-free extracts. This incompatibility has precluded significant throughput, time and cost benefits that could be gained with the use of linear DNA in the cell-free expression workflow. Here to tackle this limitation, we report that terminal incorporation of Ter binding sites for the DNA-binding protein Tus enables highly efficient protection of linear expression templates encoding mCherry and deGFP. In Escherichia coli extracts, our method compares favorably with the previously reported GamS-mediated protection scheme. Importantly, we extend the Tus-Ter system to Vibrio natriegens extracts, and demonstrate that this simple and easily implemented method can enable an unprecedented plasmid-level expression from linear templates in this emerging chassis organism.

Keywords: Escherichia coli; Ter; Tus; Vibrio natriegens; cell-free protein expression; linear expression template.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell-Free Nucleic Acids / chemistry
  • Cell-Free Nucleic Acids / genetics*
  • Escherichia coli / genetics*
  • Nucleic Acid Conformation
  • Proof of Concept Study
  • Synthetic Biology / methods*
  • Vibrio / genetics*

Substances

  • Cell-Free Nucleic Acids

Supplementary concepts

  • Vibrio natriegens