Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart

Elife. 2021 Jun 21:10:e65921. doi: 10.7554/eLife.65921.

Abstract

In the adult heart, the epicardium becomes activated after injury, contributing to cardiac healing by secretion of paracrine factors. Here, we analyzed by single-cell RNA sequencing combined with RNA in situ hybridization and lineage tracing of Wilms tumor protein 1-positive (WT1+) cells, the cellular composition, location, and hierarchy of epicardial stromal cells (EpiSC) in comparison to activated myocardial fibroblasts/stromal cells in infarcted mouse hearts. We identified 11 transcriptionally distinct EpiSC populations, which can be classified into three groups, each containing a cluster of proliferating cells. Two groups expressed cardiac specification markers and sarcomeric proteins suggestive of cardiomyogenic potential. Transcripts of hypoxia-inducible factor (HIF)-1α and HIF-responsive genes were enriched in EpiSC consistent with an epicardial hypoxic niche. Expression of paracrine factors was not limited to WT1+ cells but was a general feature of activated cardiac stromal cells. Our findings provide the cellular framework by which myocardial ischemia may trigger in EpiSC the formation of cardioprotective/regenerative responses.

Keywords: ScRNAseq; cardiac fibroblasts; cell biology; epicardium; mouse; myocardial infarction; transcriptomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Fibroblasts / metabolism*
  • Gene Expression Profiling
  • In Situ Hybridization
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Myocardium / metabolism*
  • Pericardium / physiology*
  • RNA
  • Sequence Analysis, RNA
  • Single-Cell Analysis
  • Stromal Cells / metabolism*
  • Transcriptome*
  • WT1 Proteins / metabolism

Substances

  • WT1 Proteins
  • RNA