Pharmacogenomic landscape of COVID-19 therapies from Indian population genomes

Pharmacogenomics. 2021 Jul;22(10):603-618. doi: 10.2217/pgs-2021-0028. Epub 2021 Jun 18.

Abstract

Aim: Numerous drugs are being widely prescribed for COVID-19 treatment without any direct evidence for the drug safety/efficacy in patients across diverse ethnic populations. Materials & methods: We analyzed whole genomes of 1029 Indian individuals (IndiGen) to understand the extent of drug-gene (pharmacogenetic), drug-drug and drug-drug-gene interactions associated with COVID-19 therapy in the Indian population. Results: We identified 30 clinically significant pharmacogenetic variants and 73 predicted deleterious pharmacogenetic variants. COVID-19-associated pharmacogenes were substantially overlapped with those of metabolic disorder therapeutics. CYP3A4, ABCB1 and ALB are the most shared pharmacogenes. Fifteen COVID-19 therapeutics were predicted as likely drug-drug interaction candidates when used with four CYP inhibitor drugs. Conclusion: Our findings provide actionable insights for future validation studies and improved clinical decisions for COVID-19 therapy in Indians.

Keywords: COVID-19 therapies; Indian population; drug–drug interactions; drug–drug–gene interactions; pharmacogenomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents / therapeutic use
  • Asian People
  • COVID-19 / genetics*
  • COVID-19 Drug Treatment*
  • Drug Interactions / genetics
  • Genome / genetics
  • Genotype
  • Humans
  • India
  • Pharmacogenetics / methods
  • Pharmacogenomic Testing / methods
  • Pharmacogenomic Variants / genetics
  • SARS-CoV-2 / drug effects

Substances

  • Antiviral Agents