ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy

Marco A Tangaro; Giuseppe Defazio; Bruno Fosso; Vito Flavio Licciulli; Giorgio Grillo; Giacinto Donvito; Enrico Lavezzo; Giacomo Baruzzo; Graziano Pesole; Monica Santamaria

doi:10.1093/bioinformatics/btab431

ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy

Bioinformatics. 2021 Nov 18;37(22):4253-4254. doi: 10.1093/bioinformatics/btab431.

Authors

Affiliations

¹ Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Bari 70126, Italy.
² Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Bari 70126, Italy.
³ Institute of Biomedical Technologies, National Research Council, Bari Unit, Bari 70126, Italy.
⁴ National Institute for Nuclear Physics (INFN), Section of Bari, Bari 70126, Italy.
⁵ Department of Molecular Medicine, University of Padova, Padova 35131, Italy.
⁶ Department of Information Engineering, University of Padova, Padova 35131, Italy.

Abstract

Summary: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on Internal Transcribed Spacer 1 variants high-throughput sequencing.

Availability and implementation: ITSoneWB has been deployed on the INFN-Bari ReCaS cloud facility and is freely available on the web at http://itsonewb.cloud.ba.infn.it/galaxy.

Supplementary information: Supplementary data are available at Bioinformatics online.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computational Biology
Data Accuracy
Eukaryota*
High-Throughput Nucleotide Sequencing
Software*