Matrix metalloproteinase-2 mediates ribosomal RNA transcription by cleaving nucleolar histones

FEBS J. 2021 Dec;288(23):6736-6751. doi: 10.1111/febs.16061. Epub 2021 Jun 23.

Abstract

Cell proliferation and survival require continuous ribosome biogenesis and protein synthesis. Genes encoding ribosomal RNA are physically located in a specialized substructure within the nucleus known as the nucleolus, which has a central role in the biogenesis of ribosomes. Matrix metalloproteinase-2 was previously detected in the nucleus, however, its role there is elusive. Herein we report that matrix metalloproteinase-2 resides within the nucleolus to regulate ribosomal RNA transcription. Matrix metalloproteinase-2 is enriched at the promoter region of ribosomal RNA gene repeats, and its inhibition downregulates preribosomal RNA transcription. The N-terminal tail of histone H3 is clipped by matrix metalloproteinase-2 in the nucleolus, which is associated with increased ribosomal RNA transcription. Knocking down/out matrix metalloproteinase-2, or inhibiting its activity, prevents histone H3 cleavage and reduces both ribosomal RNA transcription and cell proliferation. In addition to the known extracellular roles of matrix metalloproteinase-2 in tumor growth, our data reveal an epigenetic mechanism whereby intranucleolar matrix metalloproteinase-2 regulates cell proliferation through histone clipping and facilitation of ribosomal RNA transcription.

Keywords: MMP-2; epigenetics; histone H3; nucleolus; rRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Cell Nucleolus / genetics*
  • Cell Nucleolus / metabolism
  • Cell Proliferation / genetics
  • Epigenesis, Genetic
  • Gene Expression Regulation, Neoplastic*
  • Gene Knockout Techniques
  • Histones / metabolism*
  • Humans
  • MCF-7 Cells
  • Matrix Metalloproteinase 2 / genetics*
  • Matrix Metalloproteinase 2 / metabolism
  • Microscopy, Fluorescence
  • PC-3 Cells
  • RNA, Ribosomal / genetics*
  • RNA, Ribosomal / metabolism
  • Transcription, Genetic*

Substances

  • Histones
  • RNA, Ribosomal
  • MMP2 protein, human
  • Matrix Metalloproteinase 2