Synthesis and biological evaluation of thiazolidinedione derivatives with high ligand efficiency to P. aeruginosa PhzS

J Enzyme Inhib Med Chem. 2021 Dec;36(1):1217-1229. doi: 10.1080/14756366.2021.1931165.

Abstract

The thiazolidinone ring is found in compounds that have widespan biology activity and there is mechanism-based evidence that compounds bearing this moiety inhibit P. aeruginosa PhzS (PaPzhS), a key enzyme in the biosynthesis of the virulence factor named pyocyanin. Ten novel thiazolidinone derivatives were synthesised and screened against PaPhzS, using two orthogonal assays. The biological results provided by these and 28 other compounds, whose synthesis had been described, suggest that the dihydroquinazoline ring, found in the previous hit (A- Kd = 18 µM and LE = 0.20), is not required for PaPzhS inhibition, but unsubstituted nitrogen at the thiazolidinone ring is. The molecular simplification approach, pursued in this work, afforded an optimised lead compound (13- 5-(2,4-dimethoxyphenyl)thiazolidine-2,4-dione) with 10-fold improvement in affinity (Kd= 1.68 µM) and more than 100% increase in LE (0.45), which follows the same inhibition mode as the original hit compound (competitive to NADH).Executive summaryPhzS is a key enzyme in the pyocyanin biosynthesis pathway in P. aeruginosa.Orthogonal assays (TSA and FITC) show that fragment-like thiazolidinedione derivatives bind to PaPhzS with one-digit micromolar affinity.Fragment-like thiazolidinedione derivatives bind to the cofactor (NADH) binding site in PaPhzS.The molecular simplification optimised the ligand efficiency and affinity of the lead compound.

Keywords: P. aeruginosa; Thiazolidinone; antimicrobial resistance; pyocyanin biosynthesis inhibition.

MeSH terms

  • Anti-Bacterial Agents / chemical synthesis*
  • Anti-Bacterial Agents / pharmacology*
  • Humans
  • Ligands
  • Pseudomonas aeruginosa / drug effects*
  • Thiazolidinediones / chemical synthesis
  • Thiazolidinediones / pharmacology*

Substances

  • Anti-Bacterial Agents
  • Ligands
  • Thiazolidinediones

Grants and funding

The authors acknowledge the support provided by CNPq [310138/2017–5 and 421304/2018–9], CAPES [TQF’s fellowship 88881.134191/2016–01] and Dr. James Parsons [Maryland University – USA] for providing the plasmids with PhzS from P. aeruginosa.