High Concordance of Genomic Profiles between Primary and Metastatic Colorectal Cancer

Int J Mol Sci. 2021 May 24;22(11):5561. doi: 10.3390/ijms22115561.

Abstract

The comparison of the genetic profiles between primary and metastatic colorectal cancer (CRC) is needed to enable the discovery of useful therapeutic targets against metastatic CRCs. We performed the targeted next generation sequencing assay of 170 cancer-associated genes for 142 metastatic CRCs, including 95 pairs of primary and metastatic CRCs, to reveal their genomic characteristics and to assess the genetic heterogeneity. The most frequently mutated gene in primary and metastatic CRCs was APC (71% vs. 65%), TP53 (54% vs. 57%), KRAS (45% vs. 44%), PIK3CA (16% vs. 19%), SMAD4 (15% vs. 14%) and FBXW7 (11% vs. 11%). The concordance in the top six frequently mutated genes was 85%, on average. The overall mutation frequencies were consistent with two sets of public data (TCGA and MSKCC). To the author's knowledge, this is the first study to compare the genetic profiles of our cohort with that of the metastatic CRCs from MSKCC. Comparative sequencing analysis between primary and metastatic CRCs revealed a high degree of genetic concordance in the current clinically actionable genes. Therefore, the genetic investigation of archived primary tumor samples with the challenges of obtaining an adequate sample from metastatic sites appears to be sufficient for the application of cancer precision medicine in the metastatic setting.

Keywords: genomic profiles; high concordance between primary and metastatic colorectal cancer; metastatic colorectal cancer.

MeSH terms

  • Adenomatous Polyposis Coli Protein / genetics
  • Aged
  • Class I Phosphatidylinositol 3-Kinases / genetics
  • Cohort Studies
  • Colorectal Neoplasms / genetics*
  • Colorectal Neoplasms / pathology*
  • Databases, Genetic
  • F-Box-WD Repeat-Containing Protein 7 / genetics
  • Female
  • Genetic Profile
  • Genomics
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Male
  • Middle Aged
  • Mutation
  • Neoplasm Grading
  • Neoplasm Metastasis / genetics
  • Proto-Oncogene Proteins p21(ras) / genetics
  • Smad4 Protein / genetics
  • Tumor Suppressor Protein p53 / genetics

Substances

  • APC protein, human
  • Adenomatous Polyposis Coli Protein
  • F-Box-WD Repeat-Containing Protein 7
  • FBXW7 protein, human
  • KRAS protein, human
  • SMAD4 protein, human
  • Smad4 Protein
  • TP53 protein, human
  • Tumor Suppressor Protein p53
  • Class I Phosphatidylinositol 3-Kinases
  • PIK3CA protein, human
  • Proto-Oncogene Proteins p21(ras)