A Novel Broad Host Range Phage Infecting Alteromonas

Viruses. 2021 May 26;13(6):987. doi: 10.3390/v13060987.

Abstract

Bacteriophages substantially contribute to bacterial mortality in the ocean and play critical roles in global biogeochemical processes. Alteromonas is a ubiquitous bacterial genus in global tropical and temperate waters, which can cross-protect marine cyanobacteria and thus has important ecological benefits. However, little is known about the biological and ecological features of Alteromonas phages (alterophages). Here, we describe a novel alterophage vB_AmeP-R8W (R8W), which belongs to the Autographiviridae family and infects the deep-clade Alteromonas mediterranea. R8W has an equidistant and icosahedral head (65 ± 1 nm in diameter) and a short tail (12 ± 2 nm in length). The genome size of R8W is 48,825 bp, with a G + C content of 40.55%. R8W possesses three putative auxiliary metabolic genes encoding proteins involved in nucleotide metabolism and DNA binding: thymidylate synthase, nucleoside triphosphate pyrophosphohydrolase, and PhoB. R8W has a rapid lytic cycle with a burst size of 88 plaque-forming units/cell. Notably, R8W has a wide host range, such that it can infect 35 Alteromonas strains; it exhibits a strong specificity for strains isolated from deep waters. R8W has two specific receptor binding proteins and a compatible holin-endolysin system, which contribute to its wide host range. The isolation of R8W will contribute to the understanding of alterophage evolution, as well as the phage-host interactions and ecological importance of alterophages.

Keywords: Alteromonas; Autographiviridae; host range; phage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alteromonas / virology*
  • Bacteriophages / isolation & purification
  • Bacteriophages / physiology*
  • Bacteriophages / ultrastructure
  • Computational Biology / methods
  • Genome, Viral
  • Genomics / methods
  • Host Specificity*
  • Models, Molecular
  • Molecular Sequence Annotation
  • Open Reading Frames
  • Phylogeny
  • Protein Conformation
  • Structure-Activity Relationship
  • Viral Proteins / chemistry
  • Viral Proteins / genetics

Substances

  • Viral Proteins