Characterization of Neoagarooligosaccharide Hydrolase Bp GH117 from a Human Gut Bacterium Bacteroides plebeius

Mar Drugs. 2021 May 13;19(5):271. doi: 10.3390/md19050271.

Abstract

α-Neoagarobiose (NAB)/neoagarooligosaccharide (NAO) hydrolase plays an important role as an exo-acting 3,6-anhydro-α-(1,3)-L-galactosidase in agarose utilization. Agarose is an abundant polysaccharide found in red seaweeds, comprising 3,6-anhydro-L-galactose (AHG) and D-galactose residues. Unlike agarose degradation, which has been reported in marine microbes, recent metagenomic analysis of Bacteroides plebeius, a human gut bacterium, revealed the presence of genes encoding enzymes involved in agarose degradation, including α-NAB/NAO hydrolase. Among the agarolytic enzymes, BpGH117 has been partially characterized. Here, we characterized the exo-acting α-NAB/NAO hydrolase BpGH117, originating from B. plebeius. The optimal temperature and pH for His-tagged BpGH117 activity were 35 °C and 9.0, respectively, indicative of its unique origin. His-tagged BpGH117 was thermostable up to 35 °C, and the enzyme activity was maintained at 80% of the initial activity at a pre-incubation temperature of 40 °C for 120 min. Km and Vmax values for NAB were 30.22 mM and 54.84 U/mg, respectively, and kcat/Km was 2.65 s-1 mM-1. These results suggest that His-tagged BpGH117 can be used for producing bioactive products such as AHG and agarotriose from agarose efficiently.

Keywords: 3,6-anhydro-L-galactose; Bacteroides plebeius; BpGH117; agarose; exo-acting 3,6-anhydro-α-(1,3)-L-galactosidase; human gut bacterium; α-neoagarooligosaccharide hydrolase.

MeSH terms

  • Bacteroides / enzymology*
  • Disaccharidases / biosynthesis*
  • Disaccharidases / chemistry*
  • Disaccharides / metabolism
  • Edetic Acid / pharmacology
  • Enzyme Assays
  • Escherichia coli / genetics
  • Galactosides / metabolism
  • Humans
  • Hydrogen-Ion Concentration
  • Ions / pharmacology
  • Kinetics
  • Oligosaccharides / metabolism
  • Protein Stability
  • Sequence Analysis, Protein
  • Temperature

Substances

  • Disaccharides
  • Galactosides
  • Ions
  • Oligosaccharides
  • neoagarotetraose
  • neoagarobiose
  • Edetic Acid
  • Disaccharidases
  • neoagarobiose hydrolase

Supplementary concepts

  • Bacteroides plebeius