Post-translational modification of RNA m6A demethylase ALKBH5 regulates ROS-induced DNA damage response

Nucleic Acids Res. 2021 Jun 4;49(10):5779-5797. doi: 10.1093/nar/gkab415.

Abstract

Faithful genome integrity maintenance plays an essential role in cell survival. Here, we identify the RNA demethylase ALKBH5 as a key regulator that protects cells from DNA damage and apoptosis during reactive oxygen species (ROS)-induced stress. We find that ROS significantly induces global mRNA N6-methyladenosine (m6A) levels by modulating ALKBH5 post-translational modifications (PTMs), leading to the rapid and efficient induction of thousands of genes involved in a variety of biological processes including DNA damage repair. Mechanistically, ROS promotes ALKBH5 SUMOylation through activating ERK/JNK signaling, leading to inhibition of ALKBH5 m6A demethylase activity by blocking substrate accessibility. Moreover, ERK/JNK/ALKBH5-PTMs/m6A axis is activated by ROS in hematopoietic stem/progenitor cells (HSPCs) in vivo in mice, suggesting a physiological role of this molecular pathway in the maintenance of genome stability in HSPCs. Together, our study uncovers a molecular mechanism involving ALKBH5 PTMs and increased mRNA m6A levels that protect genomic integrity of cells in response to ROS.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • AlkB Homolog 5, RNA Demethylase / genetics
  • AlkB Homolog 5, RNA Demethylase / metabolism*
  • Animals
  • Apoptosis / drug effects
  • Apoptosis / genetics
  • Bone Marrow Cells / drug effects
  • Bone Marrow Cells / metabolism
  • Cell Line, Tumor
  • DNA Damage* / drug effects
  • DNA Repair* / drug effects
  • DNA Repair* / genetics
  • Demethylation / drug effects
  • Fanconi Anemia Complementation Group Proteins / genetics
  • Fanconi Anemia Complementation Group Proteins / metabolism
  • Gene Expression Regulation / drug effects
  • Gene Expression Regulation / genetics
  • Hematopoietic Stem Cells / drug effects
  • Hematopoietic Stem Cells / metabolism
  • Humans
  • Hydrogen Peroxide / pharmacology
  • MAP Kinase Signaling System / drug effects
  • Methylation / drug effects
  • Mice
  • Phosphorylation
  • Protein Processing, Post-Translational
  • RNA, Small Interfering
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • RNA-Seq
  • Reactive Oxygen Species / metabolism*
  • Sumoylation / drug effects
  • Tandem Mass Spectrometry
  • X-linked Nuclear Protein / genetics
  • X-linked Nuclear Protein / metabolism

Substances

  • FAAP20 protein, human
  • Fanconi Anemia Complementation Group Proteins
  • IGF2BP1 protein, human
  • RNA, Small Interfering
  • RNA-Binding Proteins
  • Reactive Oxygen Species
  • Hydrogen Peroxide
  • ALKBH5 protein, human
  • ALKBH5 protein, mouse
  • AlkB Homolog 5, RNA Demethylase
  • ATRX protein, human
  • X-linked Nuclear Protein