Adaptive laboratory evolution of β-caryophyllene producing Saccharomyces cerevisiae

Microb Cell Fact. 2021 May 27;20(1):106. doi: 10.1186/s12934-021-01598-z.

Abstract

Background: β-Caryophyllene is a plant terpenoid with therapeutic and biofuel properties. Production of terpenoids through microbial cells is a potentially sustainable alternative for production. Adaptive laboratory evolution is a complementary technique to metabolic engineering for strain improvement, if the product-of-interest is coupled with growth. Here we use a combination of pathway engineering and adaptive laboratory evolution to improve the production of β-caryophyllene, an extracellular product, by leveraging the antioxidant potential of the compound.

Results: Using oxidative stress as selective pressure, we developed an adaptive laboratory evolution that worked to evolve an engineered β-caryophyllene producing yeast strain for improved production within a few generations. This strategy resulted in fourfold increase in production in isolated mutants. Further increasing the flux to β-caryophyllene in the best evolved mutant achieved a titer of 104.7 ± 6.2 mg/L product. Genomic analysis revealed a gain-of-function mutation in the a-factor exporter STE6 was identified to be involved in significantly increased production, likely as a result of increased product export.

Conclusion: An optimized selection strategy based on oxidative stress was developed to improve the production of the extracellular product β-caryophyllene in an engineered yeast strain. Application of the selection strategy in adaptive laboratory evolution resulted in mutants with significantly increased production and identification of novel responsible mutations.

Keywords: Adaptive laboratory evolution; CRISPR–Cas9; Saccharomyces cerevisiae; Selective pressure; β-Caryophyllene.

MeSH terms

  • Adaptation, Biological
  • Biological Evolution*
  • Biotechnology / methods
  • Fermentation
  • Industrial Microbiology
  • Laboratories
  • Metabolic Engineering*
  • Polycyclic Sesquiterpenes / metabolism*
  • Saccharomyces cerevisiae / metabolism*
  • Terpenes / metabolism

Substances

  • Polycyclic Sesquiterpenes
  • Terpenes
  • caryophyllene