A Comprehensive Portal for Clinical and Translational Data Warehouses

Stud Health Technol Inform. 2021 May 27:281:462-466. doi: 10.3233/SHTI210201.

Abstract

Data-driven methods in biomedical research can help to obtain new insights into the development, progression and therapy of diseases. Clinical and translational data warehouses such as Informatics for Integrating Biology and the Bedside (i2b2) and tranSMART are important solutions for this. From the well-known FAIR data principles, which are used to address the aspects of findability, accessibility, interoperability and reusability. In this paper, we focus on findability. For this purpose, we describe a portal solution that acts as a catalogue for a wide range of data warehouse instances, featuring a central access point and links to training material, such as user manuals and video tutorials. Moreover, the portal provides an overview of the status of multiple warehouses for developers and a set of statistics about the data currently loaded. Due to its modular design and the use of modern web technologies, the portal is easy to extend and customize to reflect different corporate designs and institutional requirements.

Keywords: Data Warehouse; Portal; Translational Research; i2b2; tranSMART.

MeSH terms

  • Biomedical Research*
  • Data Warehousing*
  • Informatics