Single-molecule imaging of epigenetic complexes in living cells: insights from studies on Polycomb group proteins

Nucleic Acids Res. 2021 Jul 9;49(12):6621-6637. doi: 10.1093/nar/gkab304.

Abstract

Chromatin-associated factors must locate, bind to, and assemble on specific chromatin regions to execute chromatin-templated functions. These dynamic processes are essential for understanding how chromatin achieves regulation, but direct quantification in living mammalian cells remains challenging. Over the last few years, live-cell single-molecule tracking (SMT) has emerged as a new way to observe trajectories of individual chromatin-associated factors in living mammalian cells, providing new perspectives on chromatin-templated activities. Here, we discuss the relative merits of live-cell SMT techniques currently in use. We provide new insights into how Polycomb group (PcG) proteins, master regulators of development and cell differentiation, decipher genetic and epigenetic information to achieve binding stability and highlight that Polycomb condensates facilitate target-search efficiency. We provide perspectives on liquid-liquid phase separation in organizing Polycomb targets. We suggest that epigenetic complexes integrate genetic and epigenetic information for target binding and localization and achieve target-search efficiency through nuclear organization.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Chromatin / metabolism
  • Epigenesis, Genetic
  • Polycomb Repressive Complex 1 / metabolism*
  • Polycomb Repressive Complex 2 / metabolism*
  • Protein Binding
  • Recombinant Fusion Proteins / metabolism
  • Single Molecule Imaging*
  • Transcription Factors / metabolism

Substances

  • Chromatin
  • Recombinant Fusion Proteins
  • Transcription Factors
  • Polycomb Repressive Complex 2
  • Polycomb Repressive Complex 1