Molecular Alterations in Pediatric Fibroblastic/Myofibroblastic Tumors: An Appraisal of a Next Generation Sequencing Assay in a Retrospective Single Centre Study

Pediatr Dev Pathol. 2021 Sep-Oct;24(5):405-421. doi: 10.1177/10935266211015558. Epub 2021 May 10.

Abstract

Background: Pediatric fibroblastic/myofibroblastic tumors (PFMTs) can be challenging to definitively classify. Large case series or diagnostic updates have not been recently published despite identification of molecular alterations that could improve diagnostic accuracy. Our review of the literature found that over two-thirds of the more than 30 types of PFMTs harbor recurrent molecular alterations. We performed an institutional review of PFMTs to highlight limitations of a predominantly morphological classification, and evaluated the utility of a next-generation sequencing assay to aid diagnosis.

Methods: PFMTs identified over a period of 12 years were reviewed, categorized per the new WHO classification, and tested using the Oncomine Childhood Cancer Research Assay.

Results: Eighty-seven specimens from 58 patients were reviewed; 50 were chosen for molecular analysis, 16 (32%) lacking definitive classification. We identified alterations, some novel, in 33% of assayed cases. Expected alterations were identified for most known diagnoses and mutations were identified in 6 of 16 tumors (38%) that were initially unclassified.

Conclusion: We confirmed a significant subset of PFMTs remain difficult to classify using current criteria, and that a combined DNA/RNA assay can identify alterations in many of these cases, improving diagnostic certainty and suggesting a clinical utility for challenging cases.

Keywords: WHO classification; fibroblastic; myofibroblastic; next-generation sequencing assay; pediatric pathology; soft tissue tumors.

MeSH terms

  • Adolescent
  • Biomarkers, Tumor / genetics*
  • Child
  • Child, Preschool
  • Female
  • Fibroma / classification
  • Fibroma / diagnosis
  • Fibroma / genetics*
  • Fibroma / pathology
  • Granuloma, Plasma Cell / classification
  • Granuloma, Plasma Cell / diagnosis
  • Granuloma, Plasma Cell / genetics*
  • Granuloma, Plasma Cell / pathology
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Infant
  • Infant, Newborn
  • Male
  • Mutation
  • Myofibroma / classification
  • Myofibroma / diagnosis
  • Myofibroma / genetics*
  • Myofibroma / pathology
  • Oncogene Proteins, Fusion / genetics
  • Retrospective Studies
  • Sarcoma / classification
  • Sarcoma / diagnosis
  • Sarcoma / genetics*
  • Sarcoma / pathology
  • Soft Tissue Neoplasms / classification
  • Soft Tissue Neoplasms / diagnosis
  • Soft Tissue Neoplasms / genetics*
  • Soft Tissue Neoplasms / pathology
  • World Health Organization

Substances

  • Biomarkers, Tumor
  • Oncogene Proteins, Fusion