[Salvianolic acid B and its magnesium salt inhibit SARS-CoV-2 infection of Vero-E6 cells by blocking spike protein-mediated membrane fusion]

Nan Fang Yi Ke Da Xue Xue Bao. 2021 Apr 20;41(4):475-482. doi: 10.12122/j.issn.1673-4254.2021.04.01.
[Article in Chinese]

Abstract

Objective: The investigate the inhibitory effects of the traditional Chinese medicine (TCM) monomer salvianolic acid B (Sal-B) and its magnesium salt Salvia Miltiorrhiza Polyphenolate Injection (ZDDY) against SARS-CoV-2 infection in vitro and explore the molecular mechanism.

Objective: The anti-SARS-CoV-2 activity of Sal-B and ZDDY was assessed using the authentic and pseudotyped SARS-CoV-2 infection assay. The antiviral targets of Sal-B were identified by molecular docking and molecular dynamics simulation. Circular dichroism spectroscopy was used to examine the structural characteristics of HR1 and HR2 regions of SARS-CoV-2 S protein, and the S protein-mediated cell-cell fusion assay was used to evaluate the effect of Sal-B on virus-cell membrane fusion. Flow cytometry was carried out to analyze the effect of Sal-B on the binding of SARS-CoV-2 RBD to hACE2 receptor.

Objective: The median effective concentrations (EC50) of Sal-B and ZDDY against SARSCoV-2 infection in Vero-E6 cells were 55.47 μmol/L and 36.07 μg/mL, respectively. Both Sal-B and ZDDY successfully inhibited the entry of SARS-CoV-2 pseudovirus into the cells that stably expressed human ACE2 (ACE2/293T), with half maximal inhibitory concentrations (IC50) of 1.69 μmol/L and 24.81 μg/mL, respectively. Sal-B showed a binding affinity of -8.2 kcal/mol to the 6-helix bundle (6-HB) of SARS-CoV-2 S protein. Molecular dynamics simulation showed stable binding between Sal-B and the 6-HB of SARS-CoV-2 S protein at the predicted binding site. Sal-B disturbed the formation of the secondary structure of 6-HB in HR1P/HR2P mixture, resulting in a significantly lowered α-helicity (P < 0.05). Sal-B dose-dependently inhibited SARS-CoV-2 S protein-mediated cell-cell fusion, with an IC50 of 3.33 μmol/L. Sal-B showed no effect on RBD-Fc protein binding to the ACE2 receptor.

Objective: Sal-B and its magnesium salt ZDDY can inhibit the entry of SARS-CoV-2 in Vero-E6 cells in vitro by blocking SARS-CoV-2 spike protein-mediated virus-cell membrane fusion.

目的: 探究中药单体丹酚酸B(Sal-B)及其镁盐体外抑制SARS-CoV-2感染靶细胞的效果及作用机制。

方法: 利用感染性SARS-CoV-2及SARS-CoV-2假病毒体外细胞感染模型,检测Sal-B及其镁盐制剂注射用丹参多酚酸盐(ZDDY)的抗SARSCoV-2活性;利用分子对接技术与分子动力学模拟技术,寻找Sal-B的抗病毒作用靶点;利用圆二色谱技术,检测六螺旋束(6-HB)的α-螺旋构象;利用SARS-CoV-2 S蛋白介导的细胞-细胞融合体系,检测Sal-B是否作用于新冠病毒入侵宿主的膜融合过程;利用流式细胞术,检测Sal-B是否作用于新冠病毒受体结合区RBD蛋白。

结果: Sal-B与ZDDY在非洲绿猴肾细胞(VeroE6)感染模型上抑制SARS-CoV-2的半数有效浓度EC50分为55.47 μmol/L,36.07 μg/mL;Sal-B与ZDDY抑制SARS-CoV-2的进入阶段,抑制SARS-CoV-2假病毒活性的IC50分别为1.69 μmol/L,24.81 μg/mL;Sal-B可与SARS-CoV-2 S2亚基的8个氨基酸位点结合,亲和力为-8.2 kcal/moL,Sal-B在分子对接预测位点与SARS-CoV-2 S2亚基稳定结合;Sal-B干扰SARS-CoV-2 HR1与HR2形成6-HB,显著降低6-HB的α-螺旋百分比(P < 0.05);Sal-B浓度依赖性抑制SARS-CoV-2 S蛋白介导的细胞-细胞膜融合,IC50为3.33 μmol/L;Sal-B不影响SARS-CoV-2 RBD蛋白与受体ACE2结合。

结论: Sal-B及其镁盐制剂ZDDY体外可有效抑制SARS-CoV-2感染靶细胞,Sal-B通过抑制病毒膜融合过程发挥抗SARS-CoV-2活性。

Keywords: anti-viral drugs; entry inhibitors; severe acute respiratory syndrome coronavirus 2; spike protein; traditional Chinese medicine.

MeSH terms

  • Animals
  • Benzofurans
  • COVID-19*
  • Chlorocebus aethiops
  • Humans
  • Magnesium
  • Membrane Fusion
  • Molecular Docking Simulation
  • Protein Binding
  • SARS-CoV-2
  • Spike Glycoprotein, Coronavirus* / metabolism

Substances

  • Benzofurans
  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2
  • salvianolic acid B
  • Magnesium

Grants and funding

广东省"新药创制"科技重大专项项目(2019B020202002);国家中医药管理局中医药循证能力建设项目(ZZ13-035-02, 2019XZZXLG04);深圳湾实验室重点项目(S201101001)