With the more extensive application of flexible robots, the expectation for flexible manipulators is also increasing rapidly. However, the fast convergence will cause the increase of vibration amplitude to some extent, and it is difficult to obtain vibration suppression and satisfactory transient performance at the same time. In order to deal with the problem, a fixed-time learning control method is proposed to realize the fast convergence. The constraint on system outputs, system uncertainty, and input saturation is addressed under the fixed-time convergence framework. A novel adaptive law for neural networks is integrated into the backstepping method, which enhances the learning rate of neural networks. The imposed constraint on the vibration amplitude is guaranteed by using the barrier Lyapunov function (BLF). Moreover, the chattering problem is addressed by approximating the sign function smoothly. In the end, some simulations have been carried out to show the effectiveness of the proposed method.