Prognostic and immunological potential of PPM1G in hepatocellular carcinoma

Aging (Albany NY). 2021 May 5;13(9):12929-12954. doi: 10.18632/aging.202964. Epub 2021 May 5.

Abstract

Liver hepatocellular carcinoma (LIHC) remains one of the most common causes of cancer death. Prior research suggested that the PPM1G gene is involved in LIHC. To explore the role of PPM1G in LIHC, we used several online databases. Expression profiling was performed via the Gene Expression Profiling Interactive Analysis (GEPIA), Hepatocellular Carcinoma Database (HCCDB), Oncomine and Human Protein Atlas (HPA) platforms. Mutation profiles were investigated via cBio Cancer Genomics Portal (cBioPortal). Survival analysis was performed via the Kaplan-Meier (KM) plotter and International Cancer Genome Consortium (ICGC) platforms. The biological function of PPM1G was analyzed via the Enrichr database. The influence of PPM1G expression in the tumor immune microenvironment was assessed via Tumor Immune Estimation Resource (TIMER). PPM1G expression was upregulated in various tumors, including LIHC. Overexpression of PPM1G was associated with poor prognosis in LIHC. PPM1G expression might be regulated by promoter methylation, copy number variations (CNVs) and kinases and correlate with immune infiltration. The gene ontology (GO) terms associated with high PPM1G expression were mRNA splicing and the cell cycle. The results suggest that PPM1G is correlated with the prognosis of LIHC patients and associated with the tumor immune microenvironment in LIHC.

Keywords: PPM1G; hepatocellular carcinoma; immune infiltration; prognosis; spliceosome.

MeSH terms

  • Biomarkers, Tumor / genetics*
  • Carcinoma, Hepatocellular / genetics
  • Carcinoma, Hepatocellular / immunology
  • Carcinoma, Hepatocellular / mortality*
  • DNA Copy Number Variations
  • DNA Methylation
  • DNA Mutational Analysis
  • Datasets as Topic
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic / immunology
  • Gene Regulatory Networks / immunology
  • Humans
  • Kaplan-Meier Estimate
  • Liver / immunology
  • Liver / pathology
  • Liver Neoplasms / genetics
  • Liver Neoplasms / immunology
  • Liver Neoplasms / mortality*
  • Mutation
  • Prognosis
  • Promoter Regions, Genetic / genetics
  • Protein Phosphatase 2C / genetics*
  • Tumor Microenvironment / genetics
  • Tumor Microenvironment / immunology*
  • Up-Regulation / immunology

Substances

  • Biomarkers, Tumor
  • PPM1G protein, human
  • Protein Phosphatase 2C