Qualitative and quantitative detection of SARS-CoV-2 RNA in untreated wastewater in Western Cape Province, South Africa

S Afr Med J. 2021 Jan 28;111(3):198-202. doi: 10.7196/SAMJ.2021.v111i3.15154.

Abstract

Recent studies have shown that the detection of SARS-CoV-2 genetic material in wastewater may provide the basis for a surveillance system to track the environmental dissemination of this virus in communities. An effective wastewater-based epidemiology (WBE) system may prove critical in South Africa (SA), where health systems infrastructure, testing capacity, personal protective equipment and human resource capacity are constrained. In this proof-of-concept study, we investigated the potential of SARS-CoV-2 RNA surveillance in untreated wastewater as the basis for a system to monitor COVID-19 prevalence in the population, an early warning system for increased transmission, and a monitoring system to assess the effectiveness of interventions. The laboratory confirmed the presence (qualitative analysis) and determined the RNA copy number of SARS-CoV-2 viral RNA by reverse transcription polymerase chain reaction (quantitative) analysis from 24-hour composite samples collected on 18 June 2020 from five wastewater treatment plants in Western Cape Province, SA. The study has shown that a WBE system for monitoring the status and trends of COVID-19 mass infection in SA is viable, and its development and implementation may facilitate the rapid identification of hotspots for evidence-informed interventions.

MeSH terms

  • COVID-19 / epidemiology
  • Environmental Monitoring
  • Epidemiological Monitoring
  • Humans
  • Pneumonia, Viral / epidemiology
  • Proof of Concept Study
  • RNA, Viral / isolation & purification*
  • SARS-CoV-2 / isolation & purification*
  • South Africa / epidemiology
  • Wastewater / virology*

Substances

  • RNA, Viral
  • Waste Water