A Practical Guide on Computational Tools and Databases for Transposable Elements in Plants

Methods Mol Biol. 2021:2250:31-53. doi: 10.1007/978-1-0716-1134-0_3.

Abstract

In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants. For that, we organize and present this text in three sections: (1) a discussion about tools and databases on this theme; (2) hands-on of how to use a few of them; (3) an exploratory data analysis on public TE data. Finally, we are going deep to present the main challenges and possible solutions to improve resources and tools.

Keywords: Bioinformatics; Data analysis; Databases; Hands-on; Mobile; Resources; Tools.

MeSH terms

  • Big Data
  • Computational Biology / methods*
  • DNA Transposable Elements*
  • DNA, Plant / genetics
  • Data Mining
  • Databases, Genetic
  • Plants / genetics*

Substances

  • DNA Transposable Elements
  • DNA, Plant