Immobilization-free electrochemical DNA sensor based on signal cascade amplification strategy

Biotechnol Appl Biochem. 2022 Jun;69(3):1036-1046. doi: 10.1002/bab.2174. Epub 2021 Sep 2.

Abstract

The development of convenient and efficient strategies without using complex nanomaterials or enzymes for signal amplification is very important for bioanalytical applications. Herein, a novel electrochemical DNA sensor was developed by harnessing the signal amplification efficiency of catalytic hairpin assembly (CHA) and a brand-new signal marker tetraferrocene. The prepared sensor had both ends of the probe H2 labeled with tetraferrocene; both ends have a large number of unhybridized T bases, which cause tetraferrocene to move closer to the electrode surface, generating a high-efficiency amplification signal. In the presence of target DNA, it induced strand exchange reactions promoting the formation of double-stranded DNA and recycling of target DNA. Under optimal conditions, the sensor showed a good linear correlation between the peak currents and logarithm of target DNA concentrations (ranging from 0.1 fM to 0.3125 pM) with a detection limit of 0.06 fM, which is obtained by a triple signal-to-noise ratio. Additionally, the prepared sensor possesses excellent selectivity, reproducibility, and stability, demonstrating efficient and stable DNA detection methodology.

Keywords: DNA; catalytic hairpin assembly; electrochemistry; immobilization-free; tetraferrocene.

MeSH terms

  • Biosensing Techniques*
  • DNA / genetics
  • Electrochemical Techniques* / methods
  • Electrodes
  • Limit of Detection
  • Nucleic Acid Amplification Techniques
  • Reproducibility of Results

Substances

  • DNA