A guide to time-resolved structural analysis of light-activated proteins

FEBS J. 2022 Feb;289(3):576-595. doi: 10.1111/febs.15880. Epub 2021 May 1.

Abstract

Dynamical changes in protein structures are essential for protein function and occur over femtoseconds to seconds timescales. X-ray free electron lasers have facilitated investigations of structural dynamics in proteins with unprecedented temporal and spatial resolution. Light-activated proteins are attractive targets for time-resolved structural studies, as the reaction chemistry and associated protein structural changes can be triggered by short laser pulses. Proteins with different light-absorbing centres have evolved to detect light and harness photon energy to bring about downstream chemical and biological output responses. Following light absorption, rapid chemical/small-scale structural changes are typically localised around the chromophore. These localised changes are followed by larger structural changes propagated throughout the photoreceptor/photocatalyst that enables the desired chemical and/or biological output response. Time-resolved serial femtosecond crystallography (SFX) and solution scattering techniques enable direct visualisation of early chemical change in light-activated proteins on timescales previously inaccessible, whereas scattering gives access to slower timescales associated with more global structural change. Here, we review how advances in time-resolved SFX and solution scattering techniques have uncovered mechanisms of photochemistry and its coupling to output responses. We also provide a prospective on how these time-resolved structural approaches might impact on other photoreceptors/photoenzymes that have not yet been studied by these methods.

Keywords: SAXS; TR-SFX; WAXS; light-activated proteins; photoenzymes; photoreceptors; protein dynamics; time-resolved.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Crystallography, X-Ray*
  • Lasers
  • Light
  • Models, Molecular
  • Protein Conformation / radiation effects*
  • Proteins / chemistry
  • Proteins / radiation effects
  • Proteins / ultrastructure*
  • Time Factors
  • X-Ray Diffraction

Substances

  • Proteins