The deubiquitinase USP36 promotes snoRNP group SUMOylation and is essential for ribosome biogenesis

EMBO Rep. 2021 Jun 4;22(6):e50684. doi: 10.15252/embr.202050684. Epub 2021 Apr 14.

Abstract

SUMOylation plays a crucial role in regulating diverse cellular processes including ribosome biogenesis. Proteomic analyses and experimental evidence showed that a number of nucleolar proteins involved in ribosome biogenesis are modified by SUMO. However, how these proteins are SUMOylated in cells is less understood. Here, we report that USP36, a nucleolar deubiquitinating enzyme (DUB), promotes nucleolar SUMOylation. Overexpression of USP36 enhances nucleolar SUMOylation, whereas its knockdown or genetic deletion reduces the levels of SUMOylation. USP36 interacts with SUMO2 and Ubc9 and directly mediates SUMOylation in cells and in vitro. We show that USP36 promotes the SUMOylation of the small nucleolar ribonucleoprotein (snoRNP) components Nop58 and Nhp2 in cells and in vitro and their binding to snoRNAs. It also promotes the SUMOylation of snoRNP components Nop56 and DKC1. Functionally, we show that knockdown of USP36 markedly impairs rRNA processing and translation. Thus, USP36 promotes snoRNP group SUMOylation and is critical for ribosome biogenesis and protein translation.

Keywords: SUMOylation; USP36; deubiquitinating enzyme; ribosome biogenesis; snoRNP.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Cell Cycle Proteins / metabolism
  • Deubiquitinating Enzymes / genetics
  • HeLa Cells
  • Humans
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Proteomics
  • Ribonucleoproteins, Small Nucleolar* / genetics
  • Ribonucleoproteins, Small Nucleolar* / metabolism
  • Ribosomes / genetics
  • Ribosomes / metabolism
  • Sumoylation*
  • Ubiquitin Thiolesterase / genetics

Substances

  • Cell Cycle Proteins
  • DKC1 protein, human
  • NOP56 protein, human
  • Nuclear Proteins
  • Ribonucleoproteins, Small Nucleolar
  • USP36 protein, human
  • Deubiquitinating Enzymes
  • Ubiquitin Thiolesterase