Whole-exome sequencing reveals the etiology of the rare primary hepatic mucoepidermoid carcinoma

Diagn Pathol. 2021 Apr 8;16(1):29. doi: 10.1186/s13000-021-01086-3.

Abstract

Background: Primary hepatic mucoepidermoid carcinoma (HMEC) is extremely rare and the molecular etiology is still unknown. The CRTC1-MAML2 fusion gene was previously detected in a primary HMEC, which is often associated with MEC of salivary gland in the literature.

Methods: A 64-year-old male was diagnosed with HMEC based on malignant squamous cells and mucus-secreting cells in immunohistochemical examination. Fluorescence in situ hybridization (FISH) was used to detect the CRTC1-MAML2 fusion gene in HMEC. Whole-exome sequencing and Sanger sequencing were used to reveal the molecular characteristics of HMEC and analysis was performed with public data. Pedigree investigation was performed to identify susceptibility genes.

Results: Hematoxylin-eosin staining and immunohistochemistry revealed that the tumor cells were composed of malignant epidermoid malignant cells and mucous cells, indicating a diagnosis of HMEC. The CRTC1-MAML2 fusion gene was not detected in the primary HMEC, and somatic mutations in GNAS, KMT2C and ELF3 genes were identified by sequencing. Analyses of public data revealed somatic GNAS alterations in 2.1% hepatobiliary tumors and relation with parasite infection. Heterozygous germline mutations of FANCA, FANCI, FANCJ/BRIP1 and FAN1 genes were also identified. Pedigree investigation verified that mutation of Fanconi's anemia susceptibility genes were present in the pedigree.

Conclusions: Here we provide the first evidence of the molecular etiology of a rare HMEC associated with germline Fanconi's anemia gene mutations and somatic GNAS R201H mutation.

Keywords: Germline Fanconi’s anemia mutation; Hepatic mucoepidermoid carcinoma (HMEC); Somatic GNAS R201 mutation; Whole exome-sequencing (WES).

Publication types

  • Case Reports

MeSH terms

  • Biomarkers, Tumor / genetics*
  • Carcinoma, Mucoepidermoid / diagnostic imaging
  • Carcinoma, Mucoepidermoid / genetics*
  • Carcinoma, Mucoepidermoid / pathology
  • Carcinoma, Mucoepidermoid / surgery
  • Chromogranins / genetics
  • DNA Mutational Analysis*
  • Endodeoxyribonucleases / genetics
  • Exodeoxyribonucleases / genetics
  • Exome Sequencing*
  • Fanconi Anemia Complementation Group A Protein / genetics
  • Fanconi Anemia Complementation Group Proteins / genetics
  • GTP-Binding Protein alpha Subunits, Gs / genetics
  • Germ-Line Mutation*
  • Humans
  • Liver Neoplasms / diagnostic imaging
  • Liver Neoplasms / genetics*
  • Liver Neoplasms / pathology
  • Liver Neoplasms / surgery
  • Male
  • Middle Aged
  • Multifunctional Enzymes / genetics
  • Predictive Value of Tests
  • RNA Helicases / genetics

Substances

  • Biomarkers, Tumor
  • Chromogranins
  • FANCA protein, human
  • FANCI protein, human
  • Fanconi Anemia Complementation Group A Protein
  • Fanconi Anemia Complementation Group Proteins
  • Multifunctional Enzymes
  • Endodeoxyribonucleases
  • Exodeoxyribonucleases
  • FAN1 protein, human
  • GNAS protein, human
  • BRIP1 protein, human
  • RNA Helicases
  • GTP-Binding Protein alpha Subunits, Gs