Update of the global distribution of human gammaherpesvirus 8 genotypes

Sci Rep. 2021 Apr 7;11(1):7640. doi: 10.1038/s41598-021-87038-9.

Abstract

Human gammaherpesvirus 8 (HHV-8) consists of six major clades (A-F) based on the genetic sequence of the open reading frame (ORF)-K1. There are a few conflicting reports regarding the global distribution of the different HHV-8 genotypes. This study aimed to determine the global distribution of the different HHV-8 genotypes based on phylogenetic analysis of the ORF-K1 coding region using sequences published in the GenBank during 1997-2020 and construct a phylogenetic tree using the maximum likelihood algorithm with the GTR + I + G nucleotide substitution model. A total of 550 sequences from 38 countries/origins were analysed in this study. Genotypes A and C had similar global distributions and were prevalent in Africa and Europe. Genotype B was prevalent in Africa. Of the rare genotypes, genotype D was reported in East Asia and Oceania and genotype E in South America, while genotype F was prevalent in Africa. The highest genotypic diversity was reported in the American continent, with Brazil housing five HHV-8 genotypes (A, B, C, E, and F). In this study, we present update of the global distribution of HHV-8 genotypes, providing a basis for future epidemiological and evolutionary studies of HHV-8.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA, Viral / genetics
  • Databases, Genetic
  • Gammaherpesvirinae / genetics
  • Gammaherpesvirinae / pathogenicity
  • Genetic Variation / genetics
  • Genotype
  • Herpesviridae Infections / epidemiology*
  • Herpesviridae Infections / genetics
  • Herpesviridae Infections / virology
  • Herpesvirus 8, Human / genetics*
  • Herpesvirus 8, Human / pathogenicity
  • Humans
  • Open Reading Frames / genetics
  • Phylogeny
  • Sarcoma, Kaposi / epidemiology
  • Sarcoma, Kaposi / genetics*
  • Sarcoma, Kaposi / virology
  • Sequence Analysis, DNA / methods
  • Viral Proteins / genetics

Substances

  • DNA, Viral
  • Viral Proteins