Rapid visual detection of SARS-CoV-2 by colorimetric loop-mediated isothermal amplification

Biotechniques. 2021 Apr;70(4):218-225. doi: 10.2144/btn-2020-0159. Epub 2021 Apr 6.

Abstract

Evaluation of the performance of a new set of primers defined from the ORF1ab sequence, and its combination with a previously published set of primers from the N sequence, to detect SARS-CoV-2 RNA by the loop-mediated isothermal amplification technique is presented. The ORF1ab primer set enables visual detection of SARS-CoV-2 RNA in 16 min. In addition, a simultaneous reaction with both ORF1ab and N primers allows for higher sensitivity of detection, particularly when low numbers of copies are present (250 viral RNA copies). Further, the protocol is able to detect viral RNA in saliva samples. The procedure reported could be easily implemented in the generation of a new and sensitive rapid point-of care device for SARS-CoV-2 RNA visual detection.

Keywords: COVID-19; ORF1ab primers; SARS-CoV-2 detection; nucleocapsid primers; virus LAMP amplification.

MeSH terms

  • COVID-19 / diagnosis*
  • COVID-19 / virology
  • COVID-19 Nucleic Acid Testing / methods*
  • Colorimetry / methods*
  • DNA Primers
  • Humans
  • Molecular Diagnostic Techniques / methods*
  • Nucleic Acid Amplification Techniques / methods*
  • Polyproteins / genetics
  • SARS-CoV-2 / genetics*
  • Viral Proteins / genetics

Substances

  • DNA Primers
  • ORF1ab polyprotein, SARS-CoV-2
  • Polyproteins
  • Viral Proteins

Supplementary concepts

  • LAMP assay