Site-Selective Artificial Ribonucleases: Renaissance of Oligonucleotide Conjugates for Irreversible Cleavage of RNA Sequences

Molecules. 2021 Mar 19;26(6):1732. doi: 10.3390/molecules26061732.

Abstract

RNA-targeting therapeutics require highly efficient sequence-specific devices capable of RNA irreversible degradation in vivo. The most developed methods of sequence-specific RNA cleavage, such as siRNA or antisense oligonucleotides (ASO), are currently based on recruitment of either intracellular multi-protein complexes or enzymes, leaving alternative approaches (e.g., ribozymes and DNAzymes) far behind. Recently, site-selective artificial ribonucleases combining the oligonucleotide recognition motifs (or their structural analogues) and catalytically active groups in a single molecular scaffold have been proven to be a great competitor to siRNA and ASO. Using the most efficient catalytic groups, utilising both metal ion-dependent (Cu(II)-2,9-dimethylphenanthroline) and metal ion-free (Tris(2-aminobenzimidazole)) on the one hand and PNA as an RNA recognising oligonucleotide on the other, allowed site-selective artificial RNases to be created with half-lives of 0.5-1 h. Artificial RNases based on the catalytic peptide [(ArgLeu)2Gly]2 were able to take progress a step further by demonstrating an ability to cleave miRNA-21 in tumour cells and provide a significant reduction of tumour growth in mice.

Keywords: PNAzyme; RNA cleavage; Tris(2-aminobenzimidazole); artificial ribonuclease; miRNase; neocuproine; oligonucleotide-peptide conjugate.

Publication types

  • Review

MeSH terms

  • Base Sequence*
  • DNA, Catalytic / chemistry*
  • Oligonucleotides / chemistry*
  • RNA / chemistry*
  • RNA Cleavage*
  • Ribonucleases / chemistry*

Substances

  • DNA, Catalytic
  • Oligonucleotides
  • RNA
  • Ribonucleases