A Novel Computational Approach for the Discovery of Drug Delivery System Candidates for COVID-19

Int J Mol Sci. 2021 Mar 10;22(6):2815. doi: 10.3390/ijms22062815.

Abstract

In order to treat Coronavirus Disease 2019 (COVID-19), we predicted and implemented a drug delivery system (DDS) that can provide stable drug delivery through a computational approach including a clustering algorithm and the Schrödinger software. Six carrier candidates were derived by the proposed method that could find molecules meeting the predefined conditions using the molecular structure and its functional group positional information. Then, just one compound named glycyrrhizin was selected as a candidate for drug delivery through the Schrödinger software. Using glycyrrhizin, nafamostat mesilate (NM), which is known for its efficacy, was converted into micelle nanoparticles (NPs) to improve drug stability and to effectively treat COVID-19. The spherical particle morphology was confirmed by transmission electron microscopy (TEM), and the particle size and stability of 300-400 nm were evaluated by measuring DLSand the zeta potential. The loading of NM was confirmed to be more than 90% efficient using the UV spectrum.

Keywords: CADD; COVID-19; clustering; computer-aided drug discovery; docking; drug delivery system; in silico; machine learning; micelle nanoparticles; nafamostat; unsupervised learning.

MeSH terms

  • A549 Cells
  • Anti-Inflammatory Agents / chemistry
  • Anti-Inflammatory Agents / therapeutic use
  • Benzamidines / chemistry
  • Benzamidines / therapeutic use
  • COVID-19 Drug Treatment*
  • Cell Survival / drug effects
  • Cluster Analysis
  • Computational Biology / methods*
  • Computer Simulation
  • Databases, Pharmaceutical
  • Drug Carriers / chemistry
  • Drug Delivery Systems / methods*
  • Drug Repositioning
  • Drug Stability
  • Glycyrrhizic Acid / chemistry
  • Glycyrrhizic Acid / therapeutic use
  • Guanidines / chemistry
  • Guanidines / therapeutic use
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Micelles
  • Microscopy, Electron, Transmission
  • Molecular Structure
  • Nanoparticles / chemistry
  • Particle Size

Substances

  • Anti-Inflammatory Agents
  • Benzamidines
  • Drug Carriers
  • Guanidines
  • Micelles
  • Glycyrrhizic Acid
  • nafamostat