Crystal structures of inhibitor complexes of M-PMV protease with visible flap loops

Protein Sci. 2021 Jun;30(6):1258-1263. doi: 10.1002/pro.4072. Epub 2021 Apr 8.

Abstract

Mason-Pfizer monkey virus protease (PR) was crystallized in complex with two pepstatin-based inhibitors in P1 space group. In both crystal structures, the extended flap loops that lock the inhibitor/substrate over the active site, are visible in the electron density either completely or with only small gaps, providing the first observation of the conformation of the flap loops in dimeric complex form of this retropepsin. The H-bond network in the active site (with D26N mutation) differs from that reported for the P21 crystal structures and is similar to a rarely occurring system in HIV-1 PR.

Keywords: M-PMV; Mason-Pfizer monkey virus; active site architecture; aspartic protease; dimer; flap structure; inhibitor; retropepsin; retrovirus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Mason-Pfizer monkey virus / enzymology*
  • Mason-Pfizer monkey virus / genetics
  • Mutation, Missense
  • Pepstatins / chemistry*
  • Peptide Hydrolases / chemistry*
  • Peptide Hydrolases / genetics
  • Protease Inhibitors / chemistry*
  • Protein Structure, Secondary
  • Viral Proteins / antagonists & inhibitors*
  • Viral Proteins / chemistry*
  • Viral Proteins / genetics

Substances

  • Pepstatins
  • Protease Inhibitors
  • Viral Proteins
  • Peptide Hydrolases
  • pepstatin