The duality of PRDM proteins: epigenetic and structural perspectives

FEBS J. 2022 Mar;289(5):1256-1275. doi: 10.1111/febs.15844. Epub 2021 May 19.

Abstract

PRDF1 and RIZ1 homology domain containing (PRDMs) are a subfamily of Krüppel-like zinc finger proteins controlling key processes in metazoan development and in cancer. PRDMs exhibit unique dualities: (a) PR domain/ZNF arrays-their structure combines a SET-like domain known as a PR domain, typically found in methyltransferases, with a variable array of C2H2 zinc fingers (ZNF) characteristic of DNA-binding transcription factors; (b) transcriptional activators/repressors-their physiological function is context- and cell-dependent; mechanistically, some PRDMs have a PKMT activity and directly catalyze histone lysine methylation, while others are rather pseudomethyltransferases and act by recruiting transcriptional cofactors; (c) oncogenes/tumor suppressors-their pathological function depends on the specific PRDM isoform expressed during tumorigenesis. This duality is well known as the 'Yin and Yang' of PRDMs and involves a complex regulation of alternative splicing or alternative promoter usage, to generate full-length or PR-deficient isoforms with opposing functions in cancer. In conclusion, once their dualities are fully appreciated, PRDMs represent a promising class of targets in oncology by virtue of their widespread upregulation across multiple tumor types and their somatic dispensability, conferring a broad therapeutic window and limited toxic side effects. The recent discovery of a first-in-class compound able to inhibit PRDM9 activity has paved the way for the identification of further small molecular inhibitors able to counteract PRDM oncogenic activity.

Keywords: yin-yang; PRDM; epigenetic regulation; methyltransferase; pseudomethyltransferase; transcription factor.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amino Acid Sequence
  • Carcinogenesis
  • Crystallization
  • DNA / metabolism
  • Epigenesis, Genetic*
  • Meiosis
  • Neoplasms / enzymology
  • Neoplasms / pathology
  • Oncogenes
  • Protein Binding
  • Protein Conformation
  • Protein Domains
  • Protein Methyltransferases / chemistry
  • Protein Methyltransferases / genetics
  • Protein Methyltransferases / metabolism*
  • Sequence Alignment
  • Signal Transduction

Substances

  • DNA
  • Protein Methyltransferases