Designed β-Hairpins Inhibit LDH5 Oligomerization and Enzymatic Activity

J Med Chem. 2021 Apr 8;64(7):3767-3779. doi: 10.1021/acs.jmedchem.0c01898. Epub 2021 Mar 25.

Abstract

Lactate dehydrogenase 5 (LDH5) is overexpressed in metastatic tumors and is an attractive target for anticancer therapy. Small-molecule drugs have been developed to target the substrate/cofactor sites of LDH5, but none has reached the clinic to date, and alternative strategies remain almost unexplored. Combining rational and computer-based approaches, we identified peptidic sequences with high affinity toward a β-sheet region that is involved in protein-protein interactions (PPIs) required for the activity of LDH5. To improve stability and potency, these sequences were grafted into a cyclic cell-penetrating β-hairpin peptide scaffold. The lead grafted peptide, cGmC9, inhibited LDH5 activity in vitro in low micromolar range and more efficiently than the small-molecule inhibitor GNE-140. cGmC9 inhibits LDH5 by targeting an interface unlikely to be inhibited by small-molecule drugs. This lead will guide the development of new LDH5 inhibitors and challenges the landscape of drug discovery programs exclusively dedicated to small molecules.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Blood / metabolism
  • Cell Line, Tumor
  • Enzyme Inhibitors / metabolism
  • Enzyme Inhibitors / pharmacology*
  • Humans
  • Lactate Dehydrogenase 5 / antagonists & inhibitors*
  • Lactate Dehydrogenase 5 / chemistry
  • Lactate Dehydrogenase 5 / metabolism
  • Male
  • Molecular Dynamics Simulation
  • Peptides / metabolism
  • Peptides / pharmacology*
  • Protein Binding
  • Protein Conformation, beta-Strand
  • Protein Multimerization / drug effects*
  • Protein Stability

Substances

  • Enzyme Inhibitors
  • Peptides
  • Lactate Dehydrogenase 5