Purification of Total RNA from Stomach Tissue Biopsies

Methods Mol Biol. 2021:2283:51-59. doi: 10.1007/978-1-0716-1302-3_7.

Abstract

In order to further our understanding of the physiological consequences of Helicobacter pylori infection , analysis of clinical tissue specimens is required. To this end, RNA is frequently isolated from stomach biopsies of H. pylori-infected patients and compared to samples from uninfected controls to monitor gene expression using molecular methods such as reverse-transcription real-time PCR, microarrays, and next-generation sequencing. The successful purification of sufficient quantities of high-quality RNA is essential for accurate and reproducible downstream analysis. This chapter describes the key steps for high-quality RNA purification from human tissue samples, including sample collection and storage, tissue disruption and lysis, RNA purification, and assessment of RNA yield and quality.

Keywords: Helicobacter pylori; Human tissue sample; RNA; RNA isolation; Stomach biopsy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biopsy
  • Gastric Mucosa / chemistry
  • Gastric Mucosa / pathology*
  • Gene Expression Profiling
  • Gene Expression Regulation
  • Helicobacter Infections / genetics
  • Helicobacter Infections / pathology*
  • Helicobacter pylori
  • Humans
  • RNA / isolation & purification*
  • Specimen Handling

Substances

  • RNA