Translation error clusters induced by aminoglycoside antibiotics

Nat Commun. 2021 Mar 23;12(1):1830. doi: 10.1038/s41467-021-21942-6.

Abstract

Aminoglycoside antibiotics target the ribosome and induce mistranslation, yet which translation errors induce bacterial cell death is unclear. The analysis of cellular proteins by quantitative mass spectrometry shows that bactericidal aminoglycosides induce not only single translation errors, but also clusters of errors in full-length proteins in vivo with as many as four amino acid substitutions in a row. The downstream errors in a cluster are up to 10,000-fold more frequent than the first error and independent of the intracellular aminoglycoside concentration. The prevalence, length, and composition of error clusters depends not only on the misreading propensity of a given aminoglycoside, but also on its ability to inhibit ribosome translocation along the mRNA. Error clusters constitute a distinct class of misreading events in vivo that may provide the predominant source of proteotoxic stress at low aminoglycoside concentration, which is particularly important for the autocatalytic uptake of the drugs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aminoglycosides / pharmacology*
  • Anti-Bacterial Agents / pharmacology*
  • Escherichia coli / drug effects*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Mass Spectrometry
  • Mutation, Missense
  • Nebramycin / analogs & derivatives
  • Nebramycin / pharmacology
  • Peptide Elongation Factor Tu / genetics
  • Peptide Elongation Factor Tu / metabolism*
  • Peptides / genetics
  • Peptides / metabolism
  • Protein Biosynthesis / drug effects
  • Protein Biosynthesis / genetics*
  • Protein Synthesis Inhibitors / pharmacology
  • Proteome / drug effects
  • Proteome / genetics*
  • Proteome / metabolism
  • Proteomics
  • Recombinant Proteins
  • Ribosomes / drug effects
  • Ribosomes / metabolism*
  • Streptomycin / pharmacology
  • Stress, Physiological / drug effects*
  • Stress, Physiological / genetics

Substances

  • Aminoglycosides
  • Anti-Bacterial Agents
  • Peptides
  • Protein Synthesis Inhibitors
  • Proteome
  • Recombinant Proteins
  • Nebramycin
  • apramycin
  • Peptide Elongation Factor Tu
  • Streptomycin