Reconstructions of excitation patterns in cardiac tissue must contend with uncertainties due to model error, observation error, and hidden state variables. The accuracy of these state reconstructions may be improved by efforts to account for each of these sources of uncertainty, in particular, through the incorporation of uncertainty in model specification and model dynamics. To this end, we introduce stochastic modeling methods in the context of ensemble-based data assimilation and state reconstruction for cardiac dynamics in one- and three-dimensional cardiac systems. We propose two classes of methods, one following the canonical stochastic differential equation formalism, and another perturbing the ensemble evolution in the parameter space of the model, which are further characterized according to the details of the models used in the ensemble. The stochastic methods are applied to a simple model of cardiac dynamics with fast-slow time-scale separation, which permits tuning the form of effective stochastic assimilation schemes based on a similar separation of dynamical time scales. We find that the selection of slow or fast time scales in the formulation of stochastic forcing terms can be understood analogously to existing ensemble inflation techniques for accounting for finite-size effects in ensemble Kalman filter methods; however, like existing inflation methods, care must be taken in choosing relevant parameters to avoid over-driving the data assimilation process. In particular, we find that a combination of stochastic processes-analogously to the combination of additive and multiplicative inflation methods-yields improvements to the assimilation error and ensemble spread over these classical methods.